Question I want to reconstruct the site structure

[Zoo3]

It seems that my Plesk has a problem with the site composition. The influence appears clearly in the setting of Let's Encrypt.

It is a topic I made before.
Question - Let's Encrypt can not be set properly​

It seems that certificates share with each other on a newly created website. ID is duplicated.
In the example of the table below, when I create a new subdomain ID is created with '22', certificates share among ID 22.

+----+-------------------------------------+--------+------------------------+
| id | name | rep_id | name |
+----+-------------------------------------+--------+------------------------+
| 2 | Backup sign certificate | NULL | NULL |
| 10 | Lets Encrypt site4.exmample.com | 3 | site4.exmample.com |
| 11 | Lets Encrypt site2.exmample.com | 2 | site2.exmample.com |
| 22 | Lets Encrypt exmample.com | 4 | exmample.com |
| 22 | Lets Encrypt exmample.com | 4 | site3.exmample.com |
+----+-------------------------------------+--------+------------------------+​

So I would like to remodel the site configuration manually. Because it is not repaired with 'Plesk repair' command. I want to create a new subdomain (site) without duplicating the site ID. If subdomains are created normally, IDs will be duplicated. Can I forcibly change the internal source after creating the subdomain once?